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Author Archives: ageofwoese

Getting lucky with plasmid sequencing

March 16, 2015by ageofwoese

Small plasmids still comprise a sequencing “no-man’s land” – too small to justify the ridiculous coverage depth provided even from a MiSeq run, and too large to justify (in most […]

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Getting microbial genome (re)sequencing right

January 23, 2015by ageofwoese

Whether you’re knocking out genes or hunting for SNPs, it’s pretty hard to do bacterial physiology without reliable reference genomes. These days, a few hundred bucks gets you a decent […]

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Recent Posts

  • Getting lucky with plasmid sequencing
  • Video: Devesh talks about undergrad research in the Bond Lab
  • Getting microbial genome (re)sequencing right
  • Redox potential matters!

Tags

assembly genomes Geoalkalibacter geobacter imcH manganese MiSeq PacBio papers plasmids redox research resequencing SPAdes undergrads videos

contributors

U of M

departments

  • BMBB Graduate Program
  • College of Biological Sciences
  • MICaB Graduate Program
  • Microbial Engineering Graduate Program
  • Plant and Microbial Biology Department

resources

  • BioTechnology Institute
  • Microbial and Plant Genomics Institute
  • Minnesota Supercomputing Institute
  • UM Genomics Center
  • UM Informatics Institute
  • University Imaging Centers
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